main::scan_file() called too early to check prototype at /usr/local/bin/aclocal line 617. main::scan_file() called too early to check prototype at /usr/local/bin/aclocal line 617. 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libGenome-1.3.1/config/missing: Numeric user ID too large main::scan_file() called too early to check prototype at /usr/local/bin/aclocal line 617. main::scan_file() called too early to check prototype at /usr/local/bin/aclocal line 617. Useless use of /d modifier in transliteration operator at /usr/local/share/automake-1.11/Automake/Wrap.pm line 58. configure.ac:64: installing `config/config.guess' configure.ac:64: installing `config/config.sub' configure.ac:52: installing `config/install-sh' configure.ac:52: installing `config/missing' libMUSCLE/Makefile.am: installing `config/depcomp' Makefile.am: installing `./INSTALL' configure: WARNING: doxygen not found - will not generate any doxygen documentation alpha.cpp:86:10: warning: enumeration value 'ALPHA_Undefined' not handled in switch [-Wswitch] switch (Alpha) ^ 1 warning generated. bittraceback.cpp:20:29: warning: conversion from string literal to 'char *' is deprecated [-Wc++11-compat-deprecated-writable-strings] static TLSstr Str("xM xD xI"); ^ In file included from bittraceback.cpp:1: In file included from ../libMUSCLE/muscle.h:31: ../libMUSCLE/threadstorage.h:57:30: warning: sizeof on array function parameter will return size of 'char *' instead of 'char [9]' [-Wsizeof-array-argument] memcpy(t[i], t_val, sizeof(t_val)); ^ bittraceback.cpp:20:25: note: in instantiation of member function 'TLSstr::TLSstr' requested here static TLSstr Str("xM xD xI"); ^ ../libMUSCLE/threadstorage.h:55:12: note: declared here TLSstr( T t_val ){ ^ ../libMUSCLE/threadstorage.h:57:31: warning: 'memcpy' call operates on objects of type 'char' while the size is based on a different type 'char *' [-Wsizeof-pointer-memaccess] memcpy(t[i], t_val, sizeof(t_val)); ~~~~~ ^~~~~ ../libMUSCLE/threadstorage.h:57:31: note: did you mean to provide an explicit length? memcpy(t[i], t_val, sizeof(t_val)); ^~~~~ 3 warnings generated. clust.cpp:169:10: warning: enumeration value 'JOIN_Undefined' not handled in switch [-Wswitch] switch (m_JoinStyle) ^ clust.cpp:297:10: warning: enumeration value 'LINKAGE_Undefined' not handled in switch [-Wswitch] switch (m_CentroidStyle) ^ clust.cpp:613:10: warning: enumeration value 'JOIN_Undefined' not handled in switch [-Wswitch] switch (m_JoinStyle) ^ 3 warnings generated. glbalndimer.cpp:126:10: warning: enumeration values 'PPSCORE_Undefined' and 'PPSCORE_SPN' not handled in switch [-Wswitch] switch (g_PPScore.get()) ^ 1 warning generated. msa2.cpp:360:10: warning: enumeration value 'SEQWEIGHT_Undefined' not handled in switch [-Wswitch] switch (Method) ^ 1 warning generated. objscore2.cpp:24:10: warning: enumeration value 'TERMGAPS_Undefined' not handled in switch [-Wswitch] switch (g_TermGaps.get()) ^ 1 warning generated. objscore.cpp:33:10: warning: enumeration values 'OBJSCORE_Undefined' and 'OBJSCORE_SPM' not handled in switch [-Wswitch] switch (OS) ^ 1 warning generated. params.cpp:449:10: warning: enumeration value 'PPSCORE_Undefined' not handled in switch [-Wswitch] switch (g_PPScore.get()) ^ 1 warning generated. In file included from profdb.cpp:9: In file included from ../libMUSCLE/clustsetmsa.h:5: ../libMUSCLE/msadist.h:26:10: warning: 10 enumeration values not handled in switch: 'DISTANCE_Undefined', 'DISTANCE_Kmer6_6', 'DISTANCE_Kmer20_3'... [-Wswitch] switch(m_Distance) ^ 1 warning generated. profilefrommsa.cpp:233:10: warning: enumeration value 'ALPHA_Undefined' not handled in switch [-Wswitch] switch (g_Alpha.get()) ^ 1 warning generated. In file included from refine.cpp:9: In file included from ../libMUSCLE/clustsetmsa.h:5: ../libMUSCLE/msadist.h:26:10: warning: 10 enumeration values not handled in switch: 'DISTANCE_Undefined', 'DISTANCE_Kmer6_6', 'DISTANCE_Kmer20_3'... [-Wswitch] switch(m_Distance) ^ 1 warning generated. spfast.cpp:20:18: warning: conversion from string literal to 'char *' is deprecated [-Wc++11-compat-deprecated-writable-strings] case LL: return "LL"; ^ spfast.cpp:21:18: warning: conversion from string literal to 'char *' is deprecated [-Wc++11-compat-deprecated-writable-strings] case LG: return "LG"; ^ spfast.cpp:22:18: warning: conversion from string literal to 'char *' is deprecated [-Wc++11-compat-deprecated-writable-strings] case GL: return "GL"; ^ spfast.cpp:23:18: warning: conversion from string literal to 'char *' is deprecated [-Wc++11-compat-deprecated-writable-strings] case GG: return "GG"; ^ spfast.cpp:26:9: warning: conversion from string literal to 'char *' is deprecated [-Wc++11-compat-deprecated-writable-strings] return "?"; ^ 5 warnings generated. subfams.cpp:46:25: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] for (unsigned i = 0; i < uNodeCount; ++i) ~ ^ ~~~~~~~~~~ 1 warning generated. In file included from treefrommsa.cpp:5: In file included from ../libMUSCLE/clustsetmsa.h:5: ../libMUSCLE/msadist.h:26:10: warning: 10 enumeration values not handled in switch: 'DISTANCE_Undefined', 'DISTANCE_Kmer6_6', 'DISTANCE_Kmer20_3'... [-Wswitch] switch(m_Distance) ^ 1 warning generated. typetostr.cpp:15:39: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] sprintf(Str.get(), "%02d:%02d:%02d", hh, mm, ss); ~~~~ ^~ %02ld typetostr.cpp:15:43: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] sprintf(Str.get(), "%02d:%02d:%02d", hh, mm, ss); ~~~~ ^~ %02ld typetostr.cpp:15:47: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] sprintf(Str.get(), "%02d:%02d:%02d", hh, mm, ss); ~~~~ ^~ %02ld 3 warnings generated. make[1]: *** No rule to make target `../libMUSCLE/libMUSCLE-3.7.la', needed by `muscle'. Stop. make[1]: *** Waiting for unfinished jobs.... make: *** [all-recursive] Error 1 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMUSCLE-3.7.a(libMUSCLE_3_7_la-blosumla.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMUSCLE-3.7.a(libMUSCLE_3_7_la-glbalign352.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMUSCLE-3.7.a(libMUSCLE_3_7_la-globalslinux.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMUSCLE-3.7.a(libMUSCLE_3_7_la-globalswin32.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMUSCLE-3.7.a(libMUSCLE_3_7_la-gotowt.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMUSCLE-3.7.a(libMUSCLE_3_7_la-nwdasimple2.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMUSCLE-3.7.a(libMUSCLE_3_7_la-nwdasmall.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMUSCLE-3.7.a(libMUSCLE_3_7_la-nwrec.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMUSCLE-3.7.a(libMUSCLE_3_7_la-objscoreda.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMUSCLE-3.7.a(libMUSCLE_3_7_la-pam200mafft.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMUSCLE-3.7.a(libMUSCLE_3_7_la-validateids.o) has 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libMUSCLE-1.0.0/libMUSCLE/upgma2.cpp: Numeric user ID too large tar: libMUSCLE-1.0.0/libMUSCLE/usage.cpp: Numeric user ID too large tar: libMUSCLE-1.0.0/libMUSCLE/validateids.cpp: Numeric user ID too large tar: libMUSCLE-1.0.0/libMUSCLE/vtml2.cpp: Numeric user ID too large tar: libMUSCLE-1.0.0/libMUSCLE/writescorefile.cpp: Numeric user ID too large tar: libMUSCLE-1.0.0/config/config.guess: Numeric user ID too large tar: libMUSCLE-1.0.0/config/config.sub: Numeric user ID too large tar: libMUSCLE-1.0.0/config/depcomp: Numeric user ID too large tar: libMUSCLE-1.0.0/config/install-sh: Numeric user ID too large tar: libMUSCLE-1.0.0/config/ltmain.sh: Numeric user ID too large tar: libMUSCLE-1.0.0/config/missing: Numeric user ID too large main::scan_file() called too early to check prototype at /usr/local/bin/aclocal line 617. main::scan_file() called too early to check prototype at /usr/local/bin/aclocal line 617. Useless use of /d modifier in transliteration operator at /usr/local/share/automake-1.11/Automake/Wrap.pm line 58. configure.ac:66: installing `config/config.guess' configure.ac:66: installing `config/config.sub' configure.ac:54: installing `config/install-sh' configure.ac:54: installing `config/missing' libMems/Makefile.am: installing `config/depcomp' configure: WARNING: doxygen not found - will not generate any doxygen documentation FileSML.cpp:407:31: warning: adding 'smlSeqI_t' (aka 'unsigned int') to a string does not append to the string [-Wstring-plus-int] errmsg += tmp_mer.position + " is out of range\n"; ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ FileSML.cpp:407:31: note: use array indexing to silence this warning 1 warning generated. gnAlignedSequences.cpp:961:24: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] while (line.find("//")<0 || line.find("//")>line.size()) ~~~~~~~~~~~~~~~^~ gnAlignedSequences.cpp:1040:33: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] while (line.find("begin data;")<0 || line.find("begin data;")>line.length()) // searching for "begin data;" ~~~~~~~~~~~~~~~~~~~~~~~~^~ gnAlignedSequences.cpp:1248:56: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] while (alignmentFile.good() && (line.find("endblock;")<0 || line.find("endblock;")>line.length())) ~~~~~~~~~~~~~~~~~~~~~~^~ 3 warnings generated. In file included from Aligner.cpp:14: ../libMems/DistanceMatrix.h:244:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ ../libMems/DistanceMatrix.h:249:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ Aligner.cpp:1405:30: warning: '&&' within '||' [-Wlogical-op-parentheses] if( memI >= print_interval && memI % print_interval == 0 || debug) ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ Aligner.cpp:1405:30: note: place parentheses around the '&&' expression to silence this warning if( memI >= print_interval && memI % print_interval == 0 || debug) ^ ( ) Aligner.cpp:1495:30: warning: '&&' within '||' [-Wlogical-op-parentheses] if( memI >= print_interval && memI % print_interval == 0 || debug) ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ Aligner.cpp:1495:30: note: place parentheses around the '&&' expression to silence this warning if( memI >= print_interval && memI % print_interval == 0 || debug) ^ ( ) 4 warnings generated. In file included from MuscleInterface.cpp:18: /Users/117335/development/build_scripts/build/include/libMUSCLE-3.7/libMUSCLE/muscle.h:54:9: warning: 'assert' macro redefined #define assert(exp) ((void)0) ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/assert.h:92:9: note: previous definition is here #define assert(e) \ ^ 1 warning generated. In file included from ProgressiveAligner.cpp:26: ../libMems/DistanceMatrix.h:244:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ ../libMems/DistanceMatrix.h:249:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ 2 warnings generated. HomologyHMM/homology.cc:386:18: warning: self-comparison always evaluates to true [-Wtautological-compare] if (iPos0==iPos0) {} // avoid 'unused variable' warnings ^ HomologyHMM/homology.cc:450:18: warning: self-comparison always evaluates to true [-Wtautological-compare] if (iPos0==iPos0) {} // avoid 'unused variable' warnings ^ HomologyHMM/homology.cc:539:18: warning: self-comparison always evaluates to true [-Wtautological-compare] if (iPos0==iPos0) {} // avoid 'unused variable' warnings ^ HomologyHMM/homology.cc:643:18: warning: self-comparison always evaluates to true [-Wtautological-compare] if (iPos0==iPos0) {} // avoid 'unused variable' warnings ^ HomologyHMM/homology.cc:700:18: warning: self-comparison always evaluates to true [-Wtautological-compare] if (iPos0==iPos0) {} // avoid 'unused variable' warnings ^ 5 warnings generated. GreedyBreakpointElimination.cpp:209:4: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ dmSML/aPOSIXaio.c:115:21: warning: passing 'struct aiocb *[1]' to parameter of type 'const struct aiocb *const *' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] rval = aio_suspend(request_array, 1, &zero_wait); ^~~~~~~~~~~~~ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/sys/aio.h:216:45: note: passing argument to parameter 'aiocblist' here int aio_suspend( const struct aiocb *const aiocblist[], ^ 1 warning generated. dmSML/util.c:126:24: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] rm_cmd = Fmt( "/bin/rm -fv %s", filename ); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dmSML/util.c:128:24: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] rm_cmd = Fmt( "/bin/rm -f %s", filename ); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dmSML/util.c:129:16: warning: implicit declaration of function 'system' is invalid in C99 [-Wimplicit-function-declaration] return system( rm_cmd ); ^ 3 warnings generated. dmSML/dmsort.c:828:21: warning: format string is not a string literal (potentially insecure) [-Wformat-security] fprintf( stderr, buf ); ^~~ 1 warning generated. 1 warning generated. /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMems-1.6.a(PhyloTree.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMems-1.6.a(alinuxaio.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMems-1.6.a(alibc.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMems-1.6.a(awin32aio.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMems-1.6.a(sorting.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMems-1.6.a(PhyloTree.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMems-1.6.a(alinuxaio.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMems-1.6.a(alibc.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMems-1.6.a(awin32aio.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libMems-1.6.a(sorting.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/117335/development/build_scripts/build/lib/libMems-1.6.a(PhyloTree.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/117335/development/build_scripts/build/lib/libMems-1.6.a(alinuxaio.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/117335/development/build_scripts/build/lib/libMems-1.6.a(alibc.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/117335/development/build_scripts/build/lib/libMems-1.6.a(awin32aio.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/117335/development/build_scripts/build/lib/libMems-1.6.a(sorting.o) has no 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libMems-1.6.0/libMems/dmSML/awin32aio.c: Numeric user ID too large tar: libMems-1.6.0/libMems/dmSML/awin32aio.h: Numeric user ID too large tar: libMems-1.6.0/libMems/dmSML/buffer.c: Numeric user ID too large tar: libMems-1.6.0/libMems/dmSML/buffer.h: Numeric user ID too large tar: libMems-1.6.0/libMems/dmSML/dmsort.c: Numeric user ID too large tar: libMems-1.6.0/libMems/dmSML/dmsort.h: Numeric user ID too large tar: libMems-1.6.0/libMems/dmSML/sml.c: Numeric user ID too large tar: libMems-1.6.0/libMems/dmSML/sml.h: Numeric user ID too large tar: libMems-1.6.0/libMems/dmSML/sorting.c: Numeric user ID too large tar: libMems-1.6.0/libMems/dmSML/sorting.h: Numeric user ID too large tar: libMems-1.6.0/libMems/dmSML/timing.c: Numeric user ID too large tar: libMems-1.6.0/libMems/dmSML/timing.h: Numeric user ID too large tar: libMems-1.6.0/libMems/dmSML/util.c: Numeric user ID too large tar: libMems-1.6.0/libMems/dmSML/util.h: Numeric user ID too large tar: libMems-1.6.0/config/config.guess: Numeric user ID too large tar: libMems-1.6.0/config/config.sub: Numeric user ID too large tar: libMems-1.6.0/config/depcomp: Numeric user ID too large tar: libMems-1.6.0/config/install-sh: Numeric user ID too large tar: libMems-1.6.0/config/ltmain.sh: Numeric user ID too large tar: libMems-1.6.0/config/missing: Numeric user ID too large main::scan_file() called too early to check prototype at /usr/local/bin/aclocal line 617. Useless use of /d modifier in transliteration operator at /usr/local/share/automake-1.11/Automake/Wrap.pm line 58. configure.ac:9: installing `config/config.guess' configure.ac:9: installing `config/config.sub' configure.ac:11: installing `config/install-sh' configure.ac:11: installing `config/missing' src/Makefile.am: installing `config/depcomp' Makefile.am: installing `./INSTALL' configure: WARNING: unrecognized options: --disable-shared configure: WARNING: unrecognized options: --disable-shared In file included from mauveAligner.cpp:31: /Users/117335/development/build_scripts/build/include/libMems-1.6/libMems/DistanceMatrix.h:244:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ /Users/117335/development/build_scripts/build/include/libMems-1.6/libMems/DistanceMatrix.h:249:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ mauveAligner.cpp:47:9: warning: 'NELEMS' macro redefined #define NELEMS(a) ( sizeof( a ) / sizeof( *a ) ) ^ /Users/117335/development/build_scripts/build/include/libMUSCLE-3.7/libMUSCLE/threadstorage.h:22:9: note: previous definition is here #define NELEMS(o) sizeof(o)/sizeof(o[0]) ^ 3 warnings generated. repeatoire.cpp:853:5: warning: add explicit braces to avoid dangling else [-Wdangling-else] }else{ ^ 1 warning generated. In file included from getOrthologList.cpp:25: /Users/117335/development/build_scripts/build/include/libMems-1.6/libMems/DistanceMatrix.h:244:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ /Users/117335/development/build_scripts/build/include/libMems-1.6/libMems/DistanceMatrix.h:249:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ 2 warnings generated. error: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/strip: can't map file: /Users/117335/development/build_scripts/build/mauveAligner/src (Invalid argument) tar: mauvealigner-1.2.0/: Numeric user ID too large tar: mauvealigner-1.2.0/acinclude.m4: Numeric user ID too large tar: mauvealigner-1.2.0/aclocal.m4: Numeric user ID too large tar: mauvealigner-1.2.0/AUTHORS: Numeric user ID too large tar: mauvealigner-1.2.0/ChangeLog: Numeric user ID too large tar: mauvealigner-1.2.0/config/: Numeric user ID too large tar: mauvealigner-1.2.0/configure: Numeric user ID too large tar: mauvealigner-1.2.0/configure.ac: Numeric user ID too large tar: mauvealigner-1.2.0/COPYING: Numeric user ID too large tar: mauvealigner-1.2.0/INSTALL: Numeric user ID too large tar: mauvealigner-1.2.0/Makefile.am: Numeric user ID too large tar: mauvealigner-1.2.0/Makefile.in: Numeric user ID too large tar: mauvealigner-1.2.0/NEWS: Numeric user ID too large tar: mauvealigner-1.2.0/projects/: Numeric user ID too large tar: mauvealigner-1.2.0/README: Numeric user ID too large tar: mauvealigner-1.2.0/src/: Numeric user ID too large tar: mauvealigner-1.2.0/src/addUnalignedIntervals.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/alignmentProjector.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/backbone_global_to_local.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/bbAnalyze.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/bbBreakOnGenes.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/bbFilter.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/calculateBackboneCoverage.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/calculateBackboneCoverage2.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/calculateCoverage.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/config.h.in: Numeric user ID too large tar: mauvealigner-1.2.0/src/coordinateTranslate.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/countInPlaceInversions.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/createBackboneMFA.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/evd.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/extractBackbone.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/extractBackbone2.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/extractBCITrees.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/gappiness.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/getAlignmentWindows.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/getopt.c: Numeric user ID too large tar: mauvealigner-1.2.0/src/getopt.h: Numeric user ID too large tar: mauvealigner-1.2.0/src/getopt1.c: Numeric user ID too large tar: mauvealigner-1.2.0/src/getOrthologList.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/joinAlignmentFiles.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/makeBadgerMatrix.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/Makefile.am: Numeric user ID too large tar: mauvealigner-1.2.0/src/Makefile.in: Numeric user ID too large tar: mauvealigner-1.2.0/src/makeMc4Matrix.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/MatchRecord.h: Numeric user ID too large tar: mauvealigner-1.2.0/src/mauveAligner.cpp: Numeric user ID too large tar: mauvealigner-1.2.0/src/mauveAligner.h: Numeric user ID too large tar: mauvealigner-1.2.0/src/mauveToXMFA.cpp: Numeric user ID too large tar: 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